中華根瘤菌屬
根瘤菌科的一属细菌
劍菌屬（學名：Ensifer）是根瘤菌目根瘤菌科下的一屬。中華根瘤菌屬（學名：Sinorhizobium）是劍菌屬的同屬異名。中華根瘤菌屬中的草木樨中華根瘤菌（Sinorhizobium meliloti）[4][5]與苜蓿中華根瘤菌（Sinorhizobium medicae）[6]進行過測序。
劍菌屬/中華根瘤菌屬
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.JPG)
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| 費氏中華根瘤菌USDA257 | |
科學分類 
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| 域： | 細菌域 Bacteria |
| 門： | 假單胞菌門 Pseudomonadota |
| 綱： | α-變形菌綱 Alphaproteobacteria |
| 目： | 根瘤菌目 Rhizobiales |
| 科： | 根瘤菌科 Rhizobiaceae |
| 屬： | 劍菌屬 Ensifer Casida, 1982 |
| 模式種 | |
| 劍菌屬：附着劍菌 Ensifer adhaerens Casida, 1982 中華根瘤菌屬：費氏中華根瘤菌 Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988 | |
| 物種[1][2][3] | |
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見內文 | |
| 異名 | |
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名稱
該屬曾先後於1982年與1988年被命名為劍菌屬（Ensifer）與中華根瘤菌屬（Sinorhizobium）。根據國際原核微生物系統學委員會（International Committee on Systematics of Prokaryotes，ISCP）的《細菌學法規》（Bacteriological Code）規定，發表時間更早的名稱有優先命名權。[7]由於有人提議將當時劍菌屬的唯一物種附着劍菌（Ensifer adhaerens）併入中華根瘤菌屬，為此ISCP設立了一個專門分委會對此進行評估。最終劍菌屬保留其名稱，並將所有中華根瘤菌屬的物種併入劍菌屬之中。[8][9]雖然如此，在大多學術著作中還是同時延用了這兩個名稱，而中華根瘤菌屬一名則更為常見。
下屬物種
本屬包括以下物種：[10]
- 附着劍菌 Ensifer adhaerens Casida 1982[11]
- 鹼土劍菌 Ensifer alkalisoli Li et al. 2016
- Ensifer americanus (Toledo et al. 2004) Wang et al. 2015，也拼作：Ensifer americanum
- Ensifer arboris (Nick et al. 1999) Young 2003
- Ensifer aridi Rocha et al. 2020
- Ensifer aridi Le Quere et al. 2017
- 加拿大劍菌 Ensifer canadensis Bromfield et al. 2023
- Ensifer collicola Jang et al. 2017
- Ensifer fredii (Scholla and Elkan 1984) Young 2003
- Ensifer garamanticus Merabet et al. 2010[12]
- Ensifer glycinis Yan et al. 2016
- Ensifer kostiensis (Nick et al. 1999) Young 2003
- Ensifer kummerowiae (Wei et al. 2002) Young 2003
- Ensifer medicae (Rome et al. 1996) Young 2003
- 草木樨中華根瘤菌 Ensifer meliloti (Dangeard 1926) Young 2003
- 墨西哥劍菌 Ensifer mexicanus Lloret et al. 2011[13]
- Ensifer morelensis (Wang et al. 2002) Wang et al. 2015，也拼作：Ensifer morelense
- 努米底亞劍菌 Ensifer numidicus Merabet et al. 2010[12]
- Ensifer oleiphilus Ershov et al. 2023
- Ensifer psoraleae Wang et al. 2015
- Ensifer saheli (De Lajudie et al. 1994) Young 2003
- Ensifer sesbaniae Wang et al. 2015
- Ensifer shofinae Chen et al. 2017
- 菽劍菌 Ensifer sojae Li et al. 2011[14]）
- 好客中華根瘤菌 Sinorhizobium terangae corrig. De Lajudie et al. 1994[15]
- Ensifer terangae (De Lajudie et al. 1994) Young 2003
- 新疆劍菌 Ensifer xinjiangensis (Chen et al. 1988) Young 2003
- 歸入本屬的物種：
- Sinorhizobium abri Ogasawara et all. 2003[16][17]
- 美洲中華根瘤菌 Sinorhizobium americanum corrig. Toledo et al. 2003[18]
- 木本樹中華根瘤菌 Sinorhizobium arboris Nick et al. 1999[19]
- Sinorhizobium chiapanecum Rincón-Rosales et al. 2009[20]
- 費氏中華根瘤菌 Sinorhizobium fredii Scholla and Elkan 1984 emend. De Lajudie et al. 1994[21]
- Sinorhizobium indiaense Ogasawara et all. 2003[16][17]
- 柯斯第中華根瘤菌 Sinorhizobium kostiense Nick et al. 1999[19]
- 雞眼草中華根瘤菌 Sinorhizobium kummerowiae Wei et al. 2002[22]
- 苜蓿中華根瘤菌 Sinorhizobium medicae Rome et al. 1996[23]
- 草木樨中華根瘤菌 Sinorhizobium meliloti (Dangeard 1926) De Lajudie et al. 1994[15]
- 薩赫靳中華根瘤菌 Sinorhizobium saheli De Lajudie et al. 1994[15]
- Ensifer sesbaniae Wang et al. 2015
- Ensifer shofinae Chen et al. 2017
- Ensifer sojae Li et al. 2011
- Ensifer terangae (De Lajudie et al. 1994) Young 2003
- 新疆中華根瘤菌 Ensifer xinjiangensis (Chen et al. 1988) Young 2003，為Ensifer fredii (Scholla and Elkan 1984) Young 2003的異名
參考文獻
- ^ List of Prokaryotic names with Standing in Nomenclature—Genus Sinorhizobium. [2011-11-05]. （原始內容存檔於2012-03-19）.
- ^ List of Prokaryotic names with Standing in Nomenclature—Genus Ensifer. [2011-11-05]. （原始內容存檔於2012-03-19）.
- ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. 2005: 354–361. ISBN 978-0-387-24145-6.
- ^ Galibert, F.; et al. The composite genome of the legume symbiont Sinorhizobium meliloti.. Science. 2001, 293 (5530): 668–672 [2011-11-05]. PMID 11474104. doi:10.1126/science.1060966. （原始內容存檔於2008-06-21）.
- ^ NCBI Genome Page for Sinorhizobium meliloti
- ^ NCBI Genome Page for Sinorhizobium medicae
- ^ Young, J. M. The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination ‘Sinorhizobium adhaerens’ (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. Int J Syst Bacteriol. 2003, 53 (6): 2107–2110 [2011-11-05]. doi:10.1099/ijs.0.02665-0. （原始內容存檔於2009-02-11）.
- ^ Lindström, K., and Martinez-Romero, M. E. International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Agrobacterium and Rhizobium. Minutes of the meeting, 4 July 2001, Hamilton, Canada. (PDF). Int J Syst Bacteriol. 2002, 52 (6): 2337 [2011-11-05]. （原始內容 (PDF)存檔於2007-09-29）.
- ^ Judicial Commission of the International Committee on Systematics of Prokaryotes. The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer Casida 1982 and is not conserved over the latter genus name, and the species name ‘Sinorhizobium adhaerens’ is not validly published. Opinion 84.. Int J Syst Bacteriol. 2008, 58 (Pt 8): 1973. PMID 18676490. doi:10.1099/ijs.0.2008/005991-0.[永久失效連結]
- ^ Sinorhizobium Chen et al., 1988. GBIF. [2022-11-13]. （原始內容存檔於2022-11-13）.
- ^ L. E. Casida, Jr. Ensifer adhaerens gen. nov., sp. nov.: A Bacterial Predator of Bacteria in Soil. Int J Syst Bacteriol. 1982, 32 (3): 339–345. doi:10.1099/00207713-32-3-339.[永久失效連結]
- ^ 12.0 12.1 C. Merabet, M. Martens, M. Mahdhi, F. Zakhia, A. Sy, C. Le Roux, O. Domergue, R. Coopman, A. Bekki, M. Mars, A. Willems and P. de Lajudie. Multi Locus Sequence Analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov. (PDF). Int J Syst Evol Microbiol. 2009,. (Epub ahead of print) (Pt 3): 1–33. PMID 19656922. doi:10.1099/ijs.0.012088-0.[永久失效連結]
- ^ Lloret, L., Ormeño-Orrillo, E., Rincón, R., Martínez-Romero, J., Rogel-Hernández, M. A., and Martínez-Romero, E. Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico. FEMS Microbiology Ecology. 2007, 30 (4): 280–290 [2011-11-05]. PMID 17293074. doi:10.1016/j.syapm.2006.12.002. （原始內容存檔於2019-02-19）.
- ^ Li, Q. Q, Tao Wang, E. T., Chang, Y. L., Zhang, Y. Z., Zhang, Y. M., Sui, X. H., Chen, W. F., and Chen, W. X. Ensifer (Sinorhizobium) sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils in Hebei province of China. Int J Syst Evol Microbiol. 2010, 49: 1359–1368. PMID 20851917. doi:10.1099/ijs.0.025049-0.[永久失效連結]
- ^ 15.0 15.1 15.2 Philippe de Lajudie, Anne Willems, Bruno Pot, Dirk Dewettinck, Gloria Maestrojuan, Marc Neyra, Matthew David Collins, Bernard Dreyfus, Karel Kersters, and Monique Gillis. Polyphasic Taxonomy of Rhizobia: Emendation of the Genus Sinorhizobium and Description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov.. Int J Syst Bacteriol. 1994, 44 (4): 715–733 [2011-11-05]. doi:10.1099/00207713-44-4-715. （原始內容存檔於2008-08-29）.
- ^ 16.0 16.1 Ogasawara, M., Suzuki, T., Mutoh, I., Annapurna, K., Arora, N. K., Nishimura, Y., and Maheshwari, D. K. Sinorhizobium indiaense sp. nov. and Sinorhizobium abri sp. nov. isolated from tropical legumes, Sesbania rostrata and Abrus precatorius, respectively. Symbiosis. 2003, 34 (1): 53–68.
- ^ 17.0 17.1 Because no type strains have been submitted to international culture collections, these are not currently recognized as valid species.
- ^ Toledo, I., Lloret, L., and Martínez-Romero, E. Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico. Syst Appl Microbiol. 2003, 26 (1): 54–64 [2011-11-05]. PMID 12747410. doi:10.1078/072320203322337317. （原始內容存檔於2019-02-19）.
- ^ 19.0 19.1 Nick, G., de Lajudie, P., Eardly, B. D., Suomalainen, S., Paulin, L., Zhang, X., Gillis, M., and Lindström, K. Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya. Int J Syst Bacteriol. 1999, 49 (Pt. 4): 1359–1368 [2011-11-05]. PMID 10555313. doi:10.1099/00207713-49-4-1359. （原始內容存檔於2008-07-06）.
- ^ Reiner Rincón-Rosales, Lourdes Lloret, Edith Ponce, and Esperanza Martínez-Romero. Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum. Syst Appl Microbiol. 2009, 67 (1): 103–117. PMC 2784085
. PMID 19120461. doi:10.1111/j.1574-6941.2008.00590.x.[永久失效連結]
- ^ Chen, W. X., Yan, G. H., and Li, J. L. Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov.. Int J Syst Bacteriol. 1988, 38 (4): 392–397. doi:10.1099/00207713-38-4-392.[永久失效連結]
- ^ Wei, G. H., Wang, E. T., Tan, Z. Y., Zhu, M. E, and Chen, W. X. Rhizobium indigoferae sp. nov. and Sinorhizobium kummerowiae sp. nov., respectively isolated from Indigofera spp. and Kummerowia stipulacea. Int J Syst Evol Microbiol. 2002, 52 (Pt. 6): 2231–2239 [2011-11-05]. PMID 12508892. doi:10.1099/ijs.0.02030-0. （原始內容存檔於2007-02-10）.
- ^ Rome, S., Fernandez, M. P., Brunel, B., Normand, P., Cleyet-Marel, J. C. Sinorhizobium medicae sp. nov., isolated from annual Medicago spp.. Int J Syst Bacteriol. 1996, 46 (4): 972–980 [2011-11-05]. PMID 8863426. doi:10.1099/00207713-46-4-972. （原始內容存檔於2008-09-06）.
